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Two-dimensional polyacrylamide gel electrophoresis database


USC-OGP 2-DE database 
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Searching in 'USC-OGP 2-DE database' for entry matching: H2A1D_HUMAN




USC-OGP 2-DE database:  H2A1D_HUMAN


H2A1D_HUMAN


General information about the entry
View entry in simple text format
Entry nameH2A1D_HUMAN
Primary accession numberP20671
integrated into USC-OGP 2-DE database on January 17, 2017 (release 1)
2D Annotations were last modified onJanuary 17, 2017 (version 1)
General Annotations were last modified on April 5, 2017 (version 2)
Name and origin of the protein
DescriptionRecName: Full=Histone H2A type 1-D; AltName: Full=Histone H2A.3; AltName: Full=Histone H2A/g;.
Gene nameName=HIST1H2AD
Synonyms=H2AFG
Annotated speciesHomo sapiens (Human) [TaxID: 9606]
TaxonomyEukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo.
References
[1]   2D GEL CHARACTERIZATION
Author 1., Author 2.
Submitted (Mar-2011) to Current
2D PAGE maps for identified proteins
How to interpret a protein

UVEAL_MELANOMA_3-10 {UVEAL MELANOMA 3-10}
Homo sapiens (Human)
UVEAL_MELANOMA_3-10
  map experimental info
 
UVEAL_MELANOMA_3-10

MAP LOCATIONS:
pI=4.59; Mw=16158
pI=5.02; Mw=16085
pI=5.13; Mw=15865
pI=5.68; Mw=15649

Cross-references
UniProtKB/Swiss-ProtP20671; H2A1D_HUMAN.



2D PAGE maps for identified proteins
  • How to interpret a protein map
  • You may obtain an estimated location of the protein on various 2D PAGE maps, provided the whole amino acid sequence is known. The estimation is obtained according to the computed protein's pI and Mw.
  • Warning 1: the displayed region reflects an area around the theoretical pI and molecular weight of the protein and is only provided for the user's information. It should be used with caution, as the experimental and theoretical positions of a protein may differ significantly.
  • Warning 2: the 2D PAGE map is built on demand. This may take some few seconds to be computed.



External data extracted from UniProtKB/Swiss-Prot
Extracted from UniProtKB/Swiss-Prot, release: 0.0
Entry nameH2A1D_HUMAN
Primary accession numberP20671
Secondary accession number(s) A0PK91 P57754 Q6FGY6
Sequence was last modified on January 23, 2007 (version 2)
Annotations were last modified on March 15, 2017 (version 168)
Name and origin of the protein
DescriptionRecName: Full=Histone H2A type 1-D; AltName: Full=Histone H2A.3; AltName: Full=Histone H2A/g;
Gene nameName=HIST1H2AD
Synonyms=H2AFG
Encoded onName=HIST1H2AD; Synonyms=H2AFG
KeywordsAcetylation; Chromosome; Citrullination; Complete proteome; DNA-binding; Isopeptide bond; Methylation; Nucleosome core; Nucleus; Phosphoprotein; Reference proteome; Ubl conjugation.
Copyright
Copyrighted by the UniProt Consortium, see http://www.uniprot.org/help/license. Distributed under the Creative Commons Attribution-NoDerivs License
Cross-references
EMBLX16495; CAA34511.1; -; Genomic_DNA
EMBLZ80776; CAB02538.1; -; Genomic_DNA
EMBLAY131985; AAN59966.1; -; Genomic_DNA
EMBLCR541970; CAG46768.1; -; mRNA
EMBLCR541999; CAG46796.1; -; mRNA
EMBLAL031777; CAB39197.1; -; Genomic_DNA
EMBLBC093807; AAH93807.1; -; mRNA
EMBLBC093809; AAH93809.1; -; mRNA
EMBLBC128035; AAI28036.1; -; mRNA
CCDSCCDS4591.1; -; .
PIRS06754; S06754; .
RefSeqNP_066409.1; NM_021065.3; .
UniGeneHs.626666; -; .
UniGeneHs.679229; -; .
ProteinModelPortalP20671; -; .
SMRP20671; -; .
BioGrid109267; 27; .
IntActP20671; 22; .
MINTMINT-4589032; -; .
STRING9606.ENSP00000341094; -; .
iPTMnetP20671; -; .
PhosphoSitePlusP20671; -; .
SwissPalmP20671; -; .
DMDM121978; -; .
EPDP20671; -; .
MaxQBP20671; -; .
PaxDbP20671; -; .
PeptideAtlasP20671; -; .
PRIDEP20671; -; .
TopDownProteomicsP20671; -; .
DNASU3013; -; .
EnsemblENST00000341023; ENSP00000341094; ENSG00000196866; .
GeneID3013; -; .
KEGGhsa:3013; -; .
UCSCuc003ngw.5; human; .
CTD3013; -; .
GeneCardsHIST1H2AD; -; .
HGNCHGNC:4729; HIST1H2AD; .
HPAHPA041189; -; .
MIM602792; gene; .
neXtProtNX_P20671; -; .
OpenTargetsENSG00000196866; -; .
PharmGKBPA29106; -; .
eggNOGKOG1756; Eukaryota; .
eggNOGCOG5262; LUCA; .
GeneTreeENSGT00710000106735; -; .
HOGENOMHOG000234652; -; .
HOVERGENHBG009342; -; .
InParanoidP20671; -; .
KOK11251; -; .
OMAGRANTKS; -; .
OrthoDBEOG091G0XGD; -; .
PhylomeDBP20671; -; .
TreeFamTF300137; -; .
ReactomeR-HSA-1221632; Meiotic synapsis; .
ReactomeR-HSA-171306; Packaging Of Telomere Ends; .
ReactomeR-HSA-201722; Formation of the beta-catenin:TCF transactivating complex; .
ReactomeR-HSA-212300; PRC2 methylates histones and DNA; .
ReactomeR-HSA-2299718; Condensation of Prophase Chromosomes; .
ReactomeR-HSA-2559580; Oxidative Stress Induced Senescence; .
ReactomeR-HSA-2559582; Senescence-Associated Secretory Phenotype (SASP); .
ReactomeR-HSA-2559586; DNA Damage/Telomere Stress Induced Senescence; .
ReactomeR-HSA-3214815; HDACs deacetylate histones; .
ReactomeR-HSA-3214847; HATs acetylate histones; .
ReactomeR-HSA-3214858; RMTs methylate histone arginines; .
ReactomeR-HSA-427359; SIRT1 negatively regulates rRNA Expression; .
ReactomeR-HSA-427389; ERCC6 (CSB) and EHMT2 (G9a) positively regulate rRNA expression; .
ReactomeR-HSA-427413; NoRC negatively regulates rRNA expression; .
ReactomeR-HSA-5250924; B-WICH complex positively regulates rRNA expression; .
ReactomeR-HSA-5334118; DNA methylation; .
ReactomeR-HSA-5578749; Transcriptional regulation by small RNAs; .
ReactomeR-HSA-5617472; Activation of anterior HOX genes in hindbrain development during early embryogenesis; .
ReactomeR-HSA-5625886; Activated PKN1 stimulates transcription of AR (androgen receptor) regulated genes KLK2 and KLK3; .
ReactomeR-HSA-5689603; UCH proteinases; .
ReactomeR-HSA-5689880; Ub-specific processing proteases; .
ReactomeR-HSA-5689901; Metalloprotease DUBs; .
ReactomeR-HSA-606279; Deposition of new CENPA-containing nucleosomes at the centromere; .
ReactomeR-HSA-73728; RNA Polymerase I Promoter Opening; .
ReactomeR-HSA-73777; RNA Polymerase I Chain Elongation; .
ReactomeR-HSA-912446; Meiotic recombination; .
ReactomeR-HSA-977225; Amyloid fiber formation; .
GeneWikiHIST1H2AD; -; .
GenomeRNAi3013; -; .
PROPR:P20671; -; .
ProteomesUP000005640; Chromosome 6; .
BgeeENSG00000196866; -; .
CleanExHS_HIST1H2AD; -; .
GenevisibleP20671; HS; .
GOGO:0070062; C:extracellular exosome; IDA:UniProtKB; .
GOGO:0000790; C:nuclear chromatin; IBA:GO_Central; .
GOGO:0000786; C:nucleosome; IEA:UniProtKB-KW; .
GOGO:0005634; C:nucleus; IDA:UniProtKB; .
GOGO:0003677; F:DNA binding; IBA:GO_Central; .
GOGO:0006342; P:chromatin silencing; IBA:GO_Central; .
Gene3D1.10.20.10; -; 1; .
InterProIPR009072; Histone-fold; .
InterProIPR002119; Histone_H2A; .
InterProIPR007125; Histone_H2A/H2B/H3; .
InterProIPR032454; Histone_H2A_C; .
InterProIPR032458; Histone_H2A_CS; .
PfamPF00125; Histone; 1; .
PfamPF16211; Histone_H2A_C; 1; .
PRINTSPR00620; HISTONEH2A; .
SMARTSM00414; H2A; 1; .
SUPFAMSSF47113; SSF47113; 1; .
PROSITEPS00046; HISTONE_H2A; 1; .



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Database constructed and maintained by Angel Garcia, using the Make2D-DB II package (ver. 3.10.2) from the World-2DPAGE Constellation of the ExPASy web server

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